The Evaluation Of rs11776042 Polymorphism Effect On Colorectal Cancer Risk In The Iranian Population: A Case-Control Study
Evaluation of rs11776042 In piR-015551 Effect On CRC Risk
Abstract
Background: Recently, it has been shown that, piRNAs as a new class of non-coding RNAs (ncRNAs), play crucial roles in germline development and carcinogenesis. Despite this, the study on the effects of piRNAs polymorphism (piR-SNP) on colorectal cancer (CRC) risk is scarce. We evaluate the impact of rs11776042 in piRNA 015551 on CRC initiation and development in the Iranian population. Matherials & METHODS: The association of novel polymorphisms rs11776042 in piRNA 015551 gene with CRC risk using a case-control study on the Iranian population was estimated. All subjects were evaluated by TETRA primer-Amplification refractory mutation system polymerase chain reaction (TP-ARMS- PCR assay) Results: The genotypes frequency was 27%, 68% and 0.05% for C/C, C/T and T/T in controls and 31%, 65% and 0.04% in CRC patients respectively. The frequency of the C allele was 63% in patients versus 61% in controls and, T allele frequency was 37% in patients versus 39% in controls. Conclusion: No significant difference was found in genotype and allele frequencies between the cases and controls for rs11776042 polymorphism in piRNA 015551 in our population.
1 .Ferlay J, Soerjomataram I, Ervik M, Dikshit R, Eser S, Mathers C, et al (2014). Cancer Incidence and Mortality Worldwide. International Agency for Research on Cancer, Int J Cancer.
2 .Sung Hwan Cho, Jung Jae Ko, Jung Oh Kim, Young Joo Jeon, et al (2015).3’-UTR Polymorphisms in the MiRNA Machinery Genes DROSHA, DICER1, RAN, and XPO5 Are Associated with Colorectal Cancer Risk in a Korean Population. PLoS One Journal.
3 .Lee IM, Shiroma EJ, Lobelo F, Puska P, Blair SN, Katzmarzyk PT (2012). Effect of physical inactivity on major non‐communicable diseases worldwide: an analysis of burden of disease and life expectancy. Lancet. 380(9838):219‐229
4 .Zhao Y, Du Y, Zhao S, Guo Z (2015). Single‐nucleotide polymorphisms of microRNA processing machinery genes and risk of colorectal cancer. Onco Targets Ther. 421‐425.
5 .Zoratto F, Rossi L, Verrico M, et al (2014). Focus on genetic and epigenetic events of colorectal cancer pathogenesis: implications for molecular diagnosis. Tumor Biol. 35(7): 6195‐6206.
6 .Prashanth Rawla , Prashanth Rawla .Prashanth Rawla, et al (2019). Epidemiology of colorectal cancer: incidence, mortality, survival, and risk factors. Prz Gastroenterol.
7 .Rebecca L. Siegel MPH, Kimberly D. Miller MPH, Ann Goding Sauer MSPH, Stacey A. Fedewa PhD, Lynn F. Butterly MD, Joseph C. Anderson MD, Andrea Cercek MD, Robert A. Smith PhD, Ahmedin Jemal DVM, PhD. Colorectal cancer statistics, 2020.
8 .Howlader N, Noone A, Krapcho M, Miller D, Bishop K, Altekruse S, Kosary C, Yu M, Ruhl J and Tatalovich Z: SEER cancer statistics review. 1975-2013, National Cancer Institute; Bethesda, MD
9 .Herszenyi L and Tulassay Z: Epidemiology of gastrointestinal and liver tumors. Eur Rev Med Pharmacol Sci. 14:249–258. 2010.PubMed/NCBI
10 . Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, et al: A novel class of small RNAs bind to MILI protein in mouse testes. Nature. 442:203–207. 2006. View Article : Google Scholar : PubMed/NCBI
11 .Girard A, Sachidanandam R, Hannon GJ and Carmell MA: A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature. 442:199–202. 2006. View Article : Google Scholar : PubMed/NCBI
12 .Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T and Hannon GJ: A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell. 31:785–799. 2008. View Article : Google Scholar : PubMed/NCBI
13 .Aravin AA and Bourc'his D: Small RNA guides for de novo DNA methylation in mammalian germ cells. Genes Dev. 22:970–975. 2008. View Article : Google Scholar : PubMed/NCBI
14 .Wang H, Burnett T, Kono S, et al. Trans-ethnic genome-wide association study of colorectal cancer identifies a new susceptibility locus in VTI1A [serial online]. Nat Commun. 2014;5:4613.
15 .Esposito T, Magliocca S, Formicola D, Gianfrancesco F. piR-015520 belongs to Piwi-associated RNAs regulates expression of the human melatonin receptor 1A gene [serial online]. PLoS One. 2011;
6:e22727.
16 .Esposito T, Magliocca S, Formicola D and Gianfrancesco F: piR_015520 belongs to Piwi-associated RNAs regulates expression of the human melatonin receptor 1A gene. PLoS One. 6:e227272011. View Article : Google Scholar : PubMed/NCBI
17 .Vella S, Gallo A, Lo Nigro A, Galvagno D, Raffa GM, Pilato M and Conaldi PG: PIWI-interacting RNA (piRNA) signatures in human cardiac progenitor cells. Int J Biochem Cell Biol. 76:1–11. 2016. View Article : Google Scholar : PubMed/NCBI
18 .Law PT, Qin H, Ching AK, Lai KP, Co NN, He M, Lung RW, Chan AW, Chan TF and Wong N: Deep sequencing of small RNA transcriptome reveals novel non-coding RNAs in hepatocellular carcinoma. J Hepatol. 58:1165–1173. 2013. View Article : Google Scholar : PubMed/NCBI
19 .Cheng J, Guo JM, Xiao BX, Miao Y, Jiang Z, Zhou H and Li QN: piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin Chim Acta. 412:1621–1625. 2011. View Article : Google Scholar : PubMed/NCBI
20 . Huang G, Hu H, Xue X, Shen S, Gao E, Guo G, et al. Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer. Clin Transl Oncol 2013; 15:563–8.
21 . Cheng J, Guo J-M, Xiao B-X, Miao Y, Jiang Z, Zhou H, et al. piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin Chim. Acta 2011; 412:1621–5.
22 . Ku H.-Y., Lin H. PIWI proteins and their interactors in piRNA biogenesis, germline development and gene expression. Nat. Sci. Rev. 2014;1:205–218.
23 .Chalbatani G.M., Dana H., Memari F., Gharagozlou E., Ashjaei S., Kheirandish P., Marmari V., Mahmoudzadeh H., Mozayani F., Maleki A.R., et al. Biological function and molecular mechanism of piRNA in cancer. Pract. Lab. Med. 2019;13:e00113.
24 . Fonseca Cabral G., Azevedo Dos Santos Pinheiro J., Vidal A.F., Santos S., Ribeiro-Dos-Santos Â. piRNAs in Gastric Cancer: A New Approach Towards Translational Research. Int. J. Mol. Sci. 2020;21
25 .Saito K. The epigenetic regulation of transposable elements by PIWI-interacting RNAs in Drosophila. Genes Genet. Syst. 2013;88:9–17.
26 . Siomi M.C., Sato K., Pezic D., Aravin A.A. PIWI-interacting small RNAs: the vanguard of genome defence. Nat. Rev. Mol. 2011;12:246–258.
27 .Huang X.A., Yin H., Sweeney S., Raha D., Snyder M., Lin H. A Major Epigenetic Programming Mechanism Guided by piRNAs. Dev. Cell. 2013;24:502–516.
28 .Robine N., Lau N.C., Balla S., Jin Z., Okamura K., Kuramochi-Miyagawa S., Blower M.D., Lai E.C. A Broadly Conserved Pathway Generates 3′UTR-Directed Primary piRNAs. Curr. Bio. 2009;19:2066–2076.
29 .Watanabe T., Lin H. Posttranscriptional Regulation of Gene Expression by Piwi Proteins and piRNAs. Mol. Cell. 2014;56:18–27.
30 .Rojas-Ríos P., Simonelig M. piRNAs and PIWI proteins: regulators of gene expression in development and stem cells. Development. 2018;145:dev161786.
31 .Fathizadeh H., Asemi Z. Epigenetic roles of PIWI proteins and piRNAs in lung cancer. Cell Biosci. 2019;9:102.
32 .Hirotsugu Ishizu,1,2 Haruhiko Siomi,2 and Mikiko C. Siomi1,2,3,4 Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines. Genes Dev. 2012 Nov 1; 26(21): 2361–2373.
33 .Guo B., Li D., Du L., Zhu X. piRNAs: biogenesis and their potential roles in cancer. Cancer Metastasis Rev. 2020.
34 .Hyun S. Small RNA Pathways That Protect the Somatic Genome. Int. J. Mol. Sci. 2017;18:912.
35 .Ross R.J., Weiner M.M., Lin H. PIWI proteins and PIWI-interacting RNAs in the soma. Nature. 2014;505:353–359.
36 .Peng L., Song L., Liu C., Lv X., Li X., Jie J., Zhao D., Li D. piR-55490 inhibits the growth of lung carcinoma by suppressing mTOR signaling. Tumor Biol. 2016;37:2749–2756.
37 .Cheng J., Guo J.-M., Xiao B.-X., Miao Y., Jiang Z., Zhou H., Li Q. piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin. Chim. Acta. 2011;412:1621–1625.
38 .Hashim A., Rizzo F., Marchese G., Ravo M., Tarallo R., Nassa G., Giurato G., Santamaria G., Cordella A., Cantarella C., et al. RNA sequencing identifies specific PIWI-interacting small non-coding RNA expression patterns in breast cancer. Oncotarget. 2014;5:9901–9910.
39 .Huang G., Hu H., Xue X., Shen S., Gao E., Guo G., Shen X., Zhang X. Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer. Clin. Transl. Oncol. 2013;15:563–568.
40 . Martinez V.D., Enfield K.S.S., Rowbotham D.A., Lam W.L. An atlas of gastric PIWI-interacting RNA transcriptomes and their utility for identifying signatures of gastric cancer recurrence. Gastric. Cancer. 2016;19:660–665.
41 .O’Donnell KA, Boeke JD. Mighty PIWIs defend the germline against genome intruders. Cell. 2007;129:37-44.
42 .Sai Lakshmi S, Agrawal S. piRNABank: a web resource on classified and clustered Piwi-interacting RNAs. Nucleic Acids Res. 2008;36:D173-D177.
43 .Chu H, Xia L, Qiu X, Gu D, Zhu L, Jin J, et al. Genetic variants in noncoding PIWI-interacting RNA and colorectal cancer risk. Cancer 2015; 121:2044–52.
44 .Miller SA, Dykes DD, Polesky HF (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16(3):1215‐1215.
45 .Ye S, Dhillon S, Ke X, Collins AR, Day IN (2001). An efficient procedure for genotyping single nucleotide polymorphisms. Nucleic Acids Res.29(17): e88‐e88.
46 .Girard A, Sachidanandam R, Hannon GJ, Carmell MA. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature.2006;442:199-202.
47 .Vogelstein, B.; Papadopoulos, N.; Velculescu, V.E.; Zhou, S.; Diaz, L.A.; Kinzler, K.W. Cancer Genome Landscapes. Science 2013, 339, 1546–1558. [CrossRef]
48 .Assumpção, C.B.; Calcagno, D.Q.; Araújo, T.M.T.; dos Santos, S.E.B.; dos Santos, Â.K.C.R.; Riggins, G.J.;Burbano, R.R.; Assumpção, P.P. The role of piRNA and its potential clinical implications in cancer. Epigenomics. 2015, 7, 975–984. [CrossRef]
49 .Fu, A.; Jacobs, D.I.; Zhu, Y. Epigenome-wide analysis of piRNAs in gene-specific DNA methylation. RNA Biol.2014, 11, 1301–1312. [CrossRef] [PubMed]
50 .Martinez, V.D.; Vucic, E.A.; Thu, K.L.; Hubaux, R.; Enfield, K.S.S.; Pikor, L.A.; Becker-Santos, D.D.; Brown, C.J.;Lam, S.; Lam, W.L. Unique somatic and malignant expression patterns implicate PIWI-interacting RNAs in cancer-type specific biology. Sci. Rep. 2015, 5, 10423. [CrossRef] [PubMed
51 .Saito, K. The epigenetic regulation of transposable elements by PIWI-interacting RNAs in Drosophila.Genes Genet. Syst. 2013, 88, 9–17. [CrossRef] [PubMed]
52 .Siomi, M.C.; Sato, K.; Pezic, D.; Aravin, A.A. PIWI-interacting small RNAs: the vanguard of genome defence.Nat. Rev. Mol. 2011, 12, 246–258. [CrossRef] [PubMed]
53 .Robine, N.; Lau, N.C.; Balla, S.; Jin, Z.; Okamura, K.; Kuramochi-Miyagawa, S.; Blower, M.D.; Lai, E.C.A Broadly Conserved Pathway Generates 3 0 UTR-Directed Primary piRNAs. Curr. Bio. 2009, 19, 2066–2076.[CrossRef
54 .Weng, W.; Liu, N.; Toiyama, Y.; Kusunoki, M.; Nagasaka, T.; Fujiwara, T.; Wei, Q.; Qin, H.; Lin, H.; Ma, Y.;et al. Novel evidence for a PIWI-interacting RNA (piRNA) as an oncogenic mediator of disease progression,and a potential prognostic biomarker in colorectal cancer. Mol. Cancer 2018, 17. [CrossRef] [PubMed]
55 .Ross, R.J.; Weiner, M.M.; Lin, H. PIWI proteins and PIWI-interacting RNAs in the soma. Nature 2014,505, 353–359. [CrossRef] [PubMed]
56 .Ernst, C.; Odom, D.T.; Kutter, C. The emergence of piRNAs against transposon invasion to preservemammalian genome integrity. Nat. Commun. 2017, 8, 1411. [CrossRef] [PubMed]
57 .Chu, H.; Hui, G.; Yuan, L.; Shi, D.; Wang, Y.; Du, M.; Zhong, D.; Ma, L.; Tong, N.; Qin, C.; et al. Identificationof novel piRNAs in bladder cancer. Cancer Lett. 2015, 356, 561–567. [CrossRef] [PubMed]
58 . Fonseca Cabral, G.; Azevedo Dos Santos Pinheiro, J.; Vidal, A.F.; Santos, S.; Ribeiro-Dos-Santos, Â. PiRNAs in Gastric Cancer: A New Approach Towards Translational Research. Int. J. Mol. Sci. 2020, 21. [CrossRef][PubMed]
59 .Watanabe, T.; Lin, H. Posttranscriptional Regulation of Gene Expression by Piwi Proteins and piRNAs.Mol. Cell 2014, 56, 18–27. [CrossRef]
60 .Sato, K.; Siomi, M.C. The piRNA pathway in Drosophila ovarian germ and somatic cells. Proc. Jpn. Acad. Ser.B Phys. Biol. Sci. 2020, 96, 32–42. [CrossRef] [PubMed]
61 .Fagegaltier, D.; Falciatori, I.; Czech, B.; Castel, S.; Perrimon, N.; Simcox, A.; Hannon, G.J. Oncogenictransformation of Drosophila somatic cells induces a functional piRNA pathway. Genes Dev. 2016, 30, 1623–1635.[CrossRef]
62 .Cheng, J.; Guo, J.-M.; Xiao, B.-X.; Miao, Y.; Jiang, Z.; Zhou, H.; Li, Q. piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin. Chim. Acta 2011, 412, 1621–1625. [CrossRef] [PubMed]
63 .Ishizu, H.; Iwasaki, Y.W.; Hirakata, S.; Ozaki, H.; Iwasaki, W.; Siomi, H.; Siomi, M.C. Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb. Cell Rep. 2015, 12, 429–440. [CrossRef]
64 .Tatiana Vinasco-Sandoval,1,† Fabiano Cordeiro Moreira,1,2,† Amanda F. Vidal,1,† Pablo Pinto,1,2 André M. Ribeiro-dos-Santos,1 Rebecca L. S. Cruz,1 Gleyce Fonseca Cabral,1 Ana K. M. Anaissi,2 Katia de Paiva Lopes,1 Arthur Ribeiro-dos-Santos,1 Samia Demachki,2 Paulo Pimentel de Assumpção,2 Ândrea Ribeiro-dos-Santos,1,2 and Sidney Santos1,2,*. Global Analyses of Expressed Piwi-Interacting RNAs in Gastric Cancer. Int J Mol Sci. 2020 Oct; 21(20): 7656.P
65 .Wenhao Weng, Na Liu, Yuji Toiyama, Masato Kusunoki, Takeshi Nagasaka, Toshiyoshi Fujiwara, Qing Wei, Huanlong Qin, Haifan Lin, Yanlei Ma, Ajay Goel1, Novel evidence for a PIWI-interacting RNA (piRNA) as an oncogenic mediator of disease progression, and a potential prognostic biomarker in colorectal cancer, Molecular Cancer (2018) 17:16.
66 .Chu H, Hui G, Yuan L, et al. Identification of novel piRNAs in bladder cancer. Cancer Lett. 2015; 356:561-567.50000-45- Cheng J, Deng H, Xiao B, et al. piR-823, a novel non-coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells. Cancer Lett. 2012; 315:12-17.
67 .Cheng J Deng H, Xiao B, et al. piR-823, a novel non-coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells. Cancer Lett. 2012;315:12-17.
68 .Cheng J, Guo JM, Xiao BX, et al. piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin Chim Acta.2011;412:1621-1625.
69 .Yan H, Wu QL, Sun CY, et al. piRNA-823 contributes to tumori-genesis by regulating de novo DNA methylation and angiogenesis in multiple myeloma. Leukemia. 2015;29:196-206.
70 .25. Cui L, Lou Y, Zhang X, Zhou H, Deng H, Song H, Yu X, Xiao B, Wang W and Guo J: Detection of circulating tumor cells in peripheral blood from patients with gastric cancer using piRNAs as markers. Clin Biochem 44: 1050-1057, 2011
71. UyBico SJ, Wu CC, Suh RD, Le NH, Brown K and Krishnam MS: Lung Cancer Staging Es‑sentials: The new TNM staging system and potential imaging pitfalls. Radiographics 30: 1163-1181, 2010
72 .Romano G, Veneziano D, Acunzo M, Croce CM. Small non‐coding RNA and cancer. Carcinogenesis. 2017;38(5):485‐491.
73 .Han YN, Li Y, Xia SQ, Zhang Y‐Y, Zheng J‐H, Li W. PIWI proteins and PIWI‐interacting RNA: emerging roles in cancer. Cell PhysiolBiochem. 2017;44(1):1‐20.
74 . Hashim A, Rizzo F, Marchese G, et al. RNA sequencing identifies specific PIWI‐interacting small non‐coding RNA expression patterns in breast cancer. Oncotarget. 2014;5(20):9901‐9910.
75 .Huang G, Hu H, Xue X, et al. Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer. ClinTransl Oncol. 2013;15(7):563‐568.
76 .Cui L, Lou Y, Zhang X, et al. Detection of circulating tumor cells in peripheral blood from patients with gastric cancer using piRNAs as markers. Clin Biochem. 2011;44(13):1050‐1057.
77 .Cheng J, Deng H, Xiao B, et al. piR‐823, a novel non‐coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells. Cancer Lett. 2012;315(1):12‐17.
78 .Yin J, Jiang X-Y, Qi W, Ji C-G, Xie X-L, Zhang D-X, et al. piR-823 contributes to colorectal tumorigenesis by enhancing the transcriptional activity of HSF1. Cancer Sci 2017;108:1746–56.
79 .Iliev R, Fedorko M, Machackova T, Mlcochova H, Svoboda M, Pacik D, et al.Expression levels of PIWI-interacting RNA, piR-823, are deregulated in tumor tissue, blood serum and urine of patients with renal cell carcinoma.Anticancer Res 2016;36:6419–23
80 .Cui L, Lou Y, Zhang X, Zhou H, Deng H, Song H, et al. Detection of circulating tumor cells in peripheral blood from patients with gastric cancer using piRNAs as markers. Clin Biochem 2011;44:1050–7.1028 Cancer Epidemiol Biomarkers Prev; 27(9) September 2018
81 .Huang X, Yuan T, Tschannen M, Sun Z, Jacob H, Du M, et al. Characterization of human plasma-derived exosomal RNAs by deep sequencing.BMC Genomics 2013;14:319.
82 .Freedman JE, Gerstein M, Mick E, Rozowsky J, Levy D, Kitchen R, et al.Diverse human extracellular RNAs are widely detected in human plasma.Nat Commun 2016;7:11106.
83 .Yuan T, Huang X, Woodcock M, Du M, Dittmar R, Wang Y, et al. Plasma extracellular RNA profiles in healthy and cancer patients. Sci Rep 2016;6:srep19413.
84 .Li D, Luo Y, Gao Y, et al. piR‐651 promotes tumor formation in non‐small cell lung carcinoma through the upregulation of cyclin D1 and CDK4. Int J Mol Med. 2016;38(3):927‐936.
85 .Peng L, Song L, Liu C, et al. piR‐55490 inhibits the growth of lung carcinoma by suppressing mTOR signaling. Tumour Biol.2016;37(2):2749‐27565.
86 .Law PT, Qin H, Ching AK, et al. Deep sequencing of small RNA transcriptome reveals novel non-coding RNAs in hepatocellular carcinoma. J Hepatol. 2013;58:1165-1173.
87 .Circulating PIWI-Interacting RNAs piR-5937 and piR-28876 Are Promising Diagnostic Biomarkers of Colon Cancer Petra Vychytilova-Faltejskova1,2, Karolina Stitkovcova1 , Lenka Radova1 , Milana Sachlova2 , Zdenka Kosarova1 , Katerina Slaba1 , Zdenek Kala1,3, Marek Svoboda1,2, Igor Kiss2 , Rostislav Vyzula2 , William C. Cho4 , and Ondrej Slaby1,2.
88 .Haiyan Chu PhD, Liping Xia PhD, Xiaonan Qiu MS, Dongying Gu PhD, Linjun Zhu PhD, Jing Jin MS, Gaoyun Hui MS, Qiuhan Hua MS, Mulong Du MS, Na Tong MD, Jinfei Chen PhD, Zhengdong Zhang PhD, Meilin Wang PhD
2 .Sung Hwan Cho, Jung Jae Ko, Jung Oh Kim, Young Joo Jeon, et al (2015).3’-UTR Polymorphisms in the MiRNA Machinery Genes DROSHA, DICER1, RAN, and XPO5 Are Associated with Colorectal Cancer Risk in a Korean Population. PLoS One Journal.
3 .Lee IM, Shiroma EJ, Lobelo F, Puska P, Blair SN, Katzmarzyk PT (2012). Effect of physical inactivity on major non‐communicable diseases worldwide: an analysis of burden of disease and life expectancy. Lancet. 380(9838):219‐229
4 .Zhao Y, Du Y, Zhao S, Guo Z (2015). Single‐nucleotide polymorphisms of microRNA processing machinery genes and risk of colorectal cancer. Onco Targets Ther. 421‐425.
5 .Zoratto F, Rossi L, Verrico M, et al (2014). Focus on genetic and epigenetic events of colorectal cancer pathogenesis: implications for molecular diagnosis. Tumor Biol. 35(7): 6195‐6206.
6 .Prashanth Rawla , Prashanth Rawla .Prashanth Rawla, et al (2019). Epidemiology of colorectal cancer: incidence, mortality, survival, and risk factors. Prz Gastroenterol.
7 .Rebecca L. Siegel MPH, Kimberly D. Miller MPH, Ann Goding Sauer MSPH, Stacey A. Fedewa PhD, Lynn F. Butterly MD, Joseph C. Anderson MD, Andrea Cercek MD, Robert A. Smith PhD, Ahmedin Jemal DVM, PhD. Colorectal cancer statistics, 2020.
8 .Howlader N, Noone A, Krapcho M, Miller D, Bishop K, Altekruse S, Kosary C, Yu M, Ruhl J and Tatalovich Z: SEER cancer statistics review. 1975-2013, National Cancer Institute; Bethesda, MD
9 .Herszenyi L and Tulassay Z: Epidemiology of gastrointestinal and liver tumors. Eur Rev Med Pharmacol Sci. 14:249–258. 2010.PubMed/NCBI
10 . Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, et al: A novel class of small RNAs bind to MILI protein in mouse testes. Nature. 442:203–207. 2006. View Article : Google Scholar : PubMed/NCBI
11 .Girard A, Sachidanandam R, Hannon GJ and Carmell MA: A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature. 442:199–202. 2006. View Article : Google Scholar : PubMed/NCBI
12 .Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T and Hannon GJ: A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell. 31:785–799. 2008. View Article : Google Scholar : PubMed/NCBI
13 .Aravin AA and Bourc'his D: Small RNA guides for de novo DNA methylation in mammalian germ cells. Genes Dev. 22:970–975. 2008. View Article : Google Scholar : PubMed/NCBI
14 .Wang H, Burnett T, Kono S, et al. Trans-ethnic genome-wide association study of colorectal cancer identifies a new susceptibility locus in VTI1A [serial online]. Nat Commun. 2014;5:4613.
15 .Esposito T, Magliocca S, Formicola D, Gianfrancesco F. piR-015520 belongs to Piwi-associated RNAs regulates expression of the human melatonin receptor 1A gene [serial online]. PLoS One. 2011;
6:e22727.
16 .Esposito T, Magliocca S, Formicola D and Gianfrancesco F: piR_015520 belongs to Piwi-associated RNAs regulates expression of the human melatonin receptor 1A gene. PLoS One. 6:e227272011. View Article : Google Scholar : PubMed/NCBI
17 .Vella S, Gallo A, Lo Nigro A, Galvagno D, Raffa GM, Pilato M and Conaldi PG: PIWI-interacting RNA (piRNA) signatures in human cardiac progenitor cells. Int J Biochem Cell Biol. 76:1–11. 2016. View Article : Google Scholar : PubMed/NCBI
18 .Law PT, Qin H, Ching AK, Lai KP, Co NN, He M, Lung RW, Chan AW, Chan TF and Wong N: Deep sequencing of small RNA transcriptome reveals novel non-coding RNAs in hepatocellular carcinoma. J Hepatol. 58:1165–1173. 2013. View Article : Google Scholar : PubMed/NCBI
19 .Cheng J, Guo JM, Xiao BX, Miao Y, Jiang Z, Zhou H and Li QN: piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin Chim Acta. 412:1621–1625. 2011. View Article : Google Scholar : PubMed/NCBI
20 . Huang G, Hu H, Xue X, Shen S, Gao E, Guo G, et al. Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer. Clin Transl Oncol 2013; 15:563–8.
21 . Cheng J, Guo J-M, Xiao B-X, Miao Y, Jiang Z, Zhou H, et al. piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin Chim. Acta 2011; 412:1621–5.
22 . Ku H.-Y., Lin H. PIWI proteins and their interactors in piRNA biogenesis, germline development and gene expression. Nat. Sci. Rev. 2014;1:205–218.
23 .Chalbatani G.M., Dana H., Memari F., Gharagozlou E., Ashjaei S., Kheirandish P., Marmari V., Mahmoudzadeh H., Mozayani F., Maleki A.R., et al. Biological function and molecular mechanism of piRNA in cancer. Pract. Lab. Med. 2019;13:e00113.
24 . Fonseca Cabral G., Azevedo Dos Santos Pinheiro J., Vidal A.F., Santos S., Ribeiro-Dos-Santos Â. piRNAs in Gastric Cancer: A New Approach Towards Translational Research. Int. J. Mol. Sci. 2020;21
25 .Saito K. The epigenetic regulation of transposable elements by PIWI-interacting RNAs in Drosophila. Genes Genet. Syst. 2013;88:9–17.
26 . Siomi M.C., Sato K., Pezic D., Aravin A.A. PIWI-interacting small RNAs: the vanguard of genome defence. Nat. Rev. Mol. 2011;12:246–258.
27 .Huang X.A., Yin H., Sweeney S., Raha D., Snyder M., Lin H. A Major Epigenetic Programming Mechanism Guided by piRNAs. Dev. Cell. 2013;24:502–516.
28 .Robine N., Lau N.C., Balla S., Jin Z., Okamura K., Kuramochi-Miyagawa S., Blower M.D., Lai E.C. A Broadly Conserved Pathway Generates 3′UTR-Directed Primary piRNAs. Curr. Bio. 2009;19:2066–2076.
29 .Watanabe T., Lin H. Posttranscriptional Regulation of Gene Expression by Piwi Proteins and piRNAs. Mol. Cell. 2014;56:18–27.
30 .Rojas-Ríos P., Simonelig M. piRNAs and PIWI proteins: regulators of gene expression in development and stem cells. Development. 2018;145:dev161786.
31 .Fathizadeh H., Asemi Z. Epigenetic roles of PIWI proteins and piRNAs in lung cancer. Cell Biosci. 2019;9:102.
32 .Hirotsugu Ishizu,1,2 Haruhiko Siomi,2 and Mikiko C. Siomi1,2,3,4 Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines. Genes Dev. 2012 Nov 1; 26(21): 2361–2373.
33 .Guo B., Li D., Du L., Zhu X. piRNAs: biogenesis and their potential roles in cancer. Cancer Metastasis Rev. 2020.
34 .Hyun S. Small RNA Pathways That Protect the Somatic Genome. Int. J. Mol. Sci. 2017;18:912.
35 .Ross R.J., Weiner M.M., Lin H. PIWI proteins and PIWI-interacting RNAs in the soma. Nature. 2014;505:353–359.
36 .Peng L., Song L., Liu C., Lv X., Li X., Jie J., Zhao D., Li D. piR-55490 inhibits the growth of lung carcinoma by suppressing mTOR signaling. Tumor Biol. 2016;37:2749–2756.
37 .Cheng J., Guo J.-M., Xiao B.-X., Miao Y., Jiang Z., Zhou H., Li Q. piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin. Chim. Acta. 2011;412:1621–1625.
38 .Hashim A., Rizzo F., Marchese G., Ravo M., Tarallo R., Nassa G., Giurato G., Santamaria G., Cordella A., Cantarella C., et al. RNA sequencing identifies specific PIWI-interacting small non-coding RNA expression patterns in breast cancer. Oncotarget. 2014;5:9901–9910.
39 .Huang G., Hu H., Xue X., Shen S., Gao E., Guo G., Shen X., Zhang X. Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer. Clin. Transl. Oncol. 2013;15:563–568.
40 . Martinez V.D., Enfield K.S.S., Rowbotham D.A., Lam W.L. An atlas of gastric PIWI-interacting RNA transcriptomes and their utility for identifying signatures of gastric cancer recurrence. Gastric. Cancer. 2016;19:660–665.
41 .O’Donnell KA, Boeke JD. Mighty PIWIs defend the germline against genome intruders. Cell. 2007;129:37-44.
42 .Sai Lakshmi S, Agrawal S. piRNABank: a web resource on classified and clustered Piwi-interacting RNAs. Nucleic Acids Res. 2008;36:D173-D177.
43 .Chu H, Xia L, Qiu X, Gu D, Zhu L, Jin J, et al. Genetic variants in noncoding PIWI-interacting RNA and colorectal cancer risk. Cancer 2015; 121:2044–52.
44 .Miller SA, Dykes DD, Polesky HF (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16(3):1215‐1215.
45 .Ye S, Dhillon S, Ke X, Collins AR, Day IN (2001). An efficient procedure for genotyping single nucleotide polymorphisms. Nucleic Acids Res.29(17): e88‐e88.
46 .Girard A, Sachidanandam R, Hannon GJ, Carmell MA. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature.2006;442:199-202.
47 .Vogelstein, B.; Papadopoulos, N.; Velculescu, V.E.; Zhou, S.; Diaz, L.A.; Kinzler, K.W. Cancer Genome Landscapes. Science 2013, 339, 1546–1558. [CrossRef]
48 .Assumpção, C.B.; Calcagno, D.Q.; Araújo, T.M.T.; dos Santos, S.E.B.; dos Santos, Â.K.C.R.; Riggins, G.J.;Burbano, R.R.; Assumpção, P.P. The role of piRNA and its potential clinical implications in cancer. Epigenomics. 2015, 7, 975–984. [CrossRef]
49 .Fu, A.; Jacobs, D.I.; Zhu, Y. Epigenome-wide analysis of piRNAs in gene-specific DNA methylation. RNA Biol.2014, 11, 1301–1312. [CrossRef] [PubMed]
50 .Martinez, V.D.; Vucic, E.A.; Thu, K.L.; Hubaux, R.; Enfield, K.S.S.; Pikor, L.A.; Becker-Santos, D.D.; Brown, C.J.;Lam, S.; Lam, W.L. Unique somatic and malignant expression patterns implicate PIWI-interacting RNAs in cancer-type specific biology. Sci. Rep. 2015, 5, 10423. [CrossRef] [PubMed
51 .Saito, K. The epigenetic regulation of transposable elements by PIWI-interacting RNAs in Drosophila.Genes Genet. Syst. 2013, 88, 9–17. [CrossRef] [PubMed]
52 .Siomi, M.C.; Sato, K.; Pezic, D.; Aravin, A.A. PIWI-interacting small RNAs: the vanguard of genome defence.Nat. Rev. Mol. 2011, 12, 246–258. [CrossRef] [PubMed]
53 .Robine, N.; Lau, N.C.; Balla, S.; Jin, Z.; Okamura, K.; Kuramochi-Miyagawa, S.; Blower, M.D.; Lai, E.C.A Broadly Conserved Pathway Generates 3 0 UTR-Directed Primary piRNAs. Curr. Bio. 2009, 19, 2066–2076.[CrossRef
54 .Weng, W.; Liu, N.; Toiyama, Y.; Kusunoki, M.; Nagasaka, T.; Fujiwara, T.; Wei, Q.; Qin, H.; Lin, H.; Ma, Y.;et al. Novel evidence for a PIWI-interacting RNA (piRNA) as an oncogenic mediator of disease progression,and a potential prognostic biomarker in colorectal cancer. Mol. Cancer 2018, 17. [CrossRef] [PubMed]
55 .Ross, R.J.; Weiner, M.M.; Lin, H. PIWI proteins and PIWI-interacting RNAs in the soma. Nature 2014,505, 353–359. [CrossRef] [PubMed]
56 .Ernst, C.; Odom, D.T.; Kutter, C. The emergence of piRNAs against transposon invasion to preservemammalian genome integrity. Nat. Commun. 2017, 8, 1411. [CrossRef] [PubMed]
57 .Chu, H.; Hui, G.; Yuan, L.; Shi, D.; Wang, Y.; Du, M.; Zhong, D.; Ma, L.; Tong, N.; Qin, C.; et al. Identificationof novel piRNAs in bladder cancer. Cancer Lett. 2015, 356, 561–567. [CrossRef] [PubMed]
58 . Fonseca Cabral, G.; Azevedo Dos Santos Pinheiro, J.; Vidal, A.F.; Santos, S.; Ribeiro-Dos-Santos, Â. PiRNAs in Gastric Cancer: A New Approach Towards Translational Research. Int. J. Mol. Sci. 2020, 21. [CrossRef][PubMed]
59 .Watanabe, T.; Lin, H. Posttranscriptional Regulation of Gene Expression by Piwi Proteins and piRNAs.Mol. Cell 2014, 56, 18–27. [CrossRef]
60 .Sato, K.; Siomi, M.C. The piRNA pathway in Drosophila ovarian germ and somatic cells. Proc. Jpn. Acad. Ser.B Phys. Biol. Sci. 2020, 96, 32–42. [CrossRef] [PubMed]
61 .Fagegaltier, D.; Falciatori, I.; Czech, B.; Castel, S.; Perrimon, N.; Simcox, A.; Hannon, G.J. Oncogenictransformation of Drosophila somatic cells induces a functional piRNA pathway. Genes Dev. 2016, 30, 1623–1635.[CrossRef]
62 .Cheng, J.; Guo, J.-M.; Xiao, B.-X.; Miao, Y.; Jiang, Z.; Zhou, H.; Li, Q. piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin. Chim. Acta 2011, 412, 1621–1625. [CrossRef] [PubMed]
63 .Ishizu, H.; Iwasaki, Y.W.; Hirakata, S.; Ozaki, H.; Iwasaki, W.; Siomi, H.; Siomi, M.C. Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb. Cell Rep. 2015, 12, 429–440. [CrossRef]
64 .Tatiana Vinasco-Sandoval,1,† Fabiano Cordeiro Moreira,1,2,† Amanda F. Vidal,1,† Pablo Pinto,1,2 André M. Ribeiro-dos-Santos,1 Rebecca L. S. Cruz,1 Gleyce Fonseca Cabral,1 Ana K. M. Anaissi,2 Katia de Paiva Lopes,1 Arthur Ribeiro-dos-Santos,1 Samia Demachki,2 Paulo Pimentel de Assumpção,2 Ândrea Ribeiro-dos-Santos,1,2 and Sidney Santos1,2,*. Global Analyses of Expressed Piwi-Interacting RNAs in Gastric Cancer. Int J Mol Sci. 2020 Oct; 21(20): 7656.P
65 .Wenhao Weng, Na Liu, Yuji Toiyama, Masato Kusunoki, Takeshi Nagasaka, Toshiyoshi Fujiwara, Qing Wei, Huanlong Qin, Haifan Lin, Yanlei Ma, Ajay Goel1, Novel evidence for a PIWI-interacting RNA (piRNA) as an oncogenic mediator of disease progression, and a potential prognostic biomarker in colorectal cancer, Molecular Cancer (2018) 17:16.
66 .Chu H, Hui G, Yuan L, et al. Identification of novel piRNAs in bladder cancer. Cancer Lett. 2015; 356:561-567.50000-45- Cheng J, Deng H, Xiao B, et al. piR-823, a novel non-coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells. Cancer Lett. 2012; 315:12-17.
67 .Cheng J Deng H, Xiao B, et al. piR-823, a novel non-coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells. Cancer Lett. 2012;315:12-17.
68 .Cheng J, Guo JM, Xiao BX, et al. piRNA, the new non-coding RNA, is aberrantly expressed in human cancer cells. Clin Chim Acta.2011;412:1621-1625.
69 .Yan H, Wu QL, Sun CY, et al. piRNA-823 contributes to tumori-genesis by regulating de novo DNA methylation and angiogenesis in multiple myeloma. Leukemia. 2015;29:196-206.
70 .25. Cui L, Lou Y, Zhang X, Zhou H, Deng H, Song H, Yu X, Xiao B, Wang W and Guo J: Detection of circulating tumor cells in peripheral blood from patients with gastric cancer using piRNAs as markers. Clin Biochem 44: 1050-1057, 2011
71. UyBico SJ, Wu CC, Suh RD, Le NH, Brown K and Krishnam MS: Lung Cancer Staging Es‑sentials: The new TNM staging system and potential imaging pitfalls. Radiographics 30: 1163-1181, 2010
72 .Romano G, Veneziano D, Acunzo M, Croce CM. Small non‐coding RNA and cancer. Carcinogenesis. 2017;38(5):485‐491.
73 .Han YN, Li Y, Xia SQ, Zhang Y‐Y, Zheng J‐H, Li W. PIWI proteins and PIWI‐interacting RNA: emerging roles in cancer. Cell PhysiolBiochem. 2017;44(1):1‐20.
74 . Hashim A, Rizzo F, Marchese G, et al. RNA sequencing identifies specific PIWI‐interacting small non‐coding RNA expression patterns in breast cancer. Oncotarget. 2014;5(20):9901‐9910.
75 .Huang G, Hu H, Xue X, et al. Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer. ClinTransl Oncol. 2013;15(7):563‐568.
76 .Cui L, Lou Y, Zhang X, et al. Detection of circulating tumor cells in peripheral blood from patients with gastric cancer using piRNAs as markers. Clin Biochem. 2011;44(13):1050‐1057.
77 .Cheng J, Deng H, Xiao B, et al. piR‐823, a novel non‐coding small RNA, demonstrates in vitro and in vivo tumor suppressive activity in human gastric cancer cells. Cancer Lett. 2012;315(1):12‐17.
78 .Yin J, Jiang X-Y, Qi W, Ji C-G, Xie X-L, Zhang D-X, et al. piR-823 contributes to colorectal tumorigenesis by enhancing the transcriptional activity of HSF1. Cancer Sci 2017;108:1746–56.
79 .Iliev R, Fedorko M, Machackova T, Mlcochova H, Svoboda M, Pacik D, et al.Expression levels of PIWI-interacting RNA, piR-823, are deregulated in tumor tissue, blood serum and urine of patients with renal cell carcinoma.Anticancer Res 2016;36:6419–23
80 .Cui L, Lou Y, Zhang X, Zhou H, Deng H, Song H, et al. Detection of circulating tumor cells in peripheral blood from patients with gastric cancer using piRNAs as markers. Clin Biochem 2011;44:1050–7.1028 Cancer Epidemiol Biomarkers Prev; 27(9) September 2018
81 .Huang X, Yuan T, Tschannen M, Sun Z, Jacob H, Du M, et al. Characterization of human plasma-derived exosomal RNAs by deep sequencing.BMC Genomics 2013;14:319.
82 .Freedman JE, Gerstein M, Mick E, Rozowsky J, Levy D, Kitchen R, et al.Diverse human extracellular RNAs are widely detected in human plasma.Nat Commun 2016;7:11106.
83 .Yuan T, Huang X, Woodcock M, Du M, Dittmar R, Wang Y, et al. Plasma extracellular RNA profiles in healthy and cancer patients. Sci Rep 2016;6:srep19413.
84 .Li D, Luo Y, Gao Y, et al. piR‐651 promotes tumor formation in non‐small cell lung carcinoma through the upregulation of cyclin D1 and CDK4. Int J Mol Med. 2016;38(3):927‐936.
85 .Peng L, Song L, Liu C, et al. piR‐55490 inhibits the growth of lung carcinoma by suppressing mTOR signaling. Tumour Biol.2016;37(2):2749‐27565.
86 .Law PT, Qin H, Ching AK, et al. Deep sequencing of small RNA transcriptome reveals novel non-coding RNAs in hepatocellular carcinoma. J Hepatol. 2013;58:1165-1173.
87 .Circulating PIWI-Interacting RNAs piR-5937 and piR-28876 Are Promising Diagnostic Biomarkers of Colon Cancer Petra Vychytilova-Faltejskova1,2, Karolina Stitkovcova1 , Lenka Radova1 , Milana Sachlova2 , Zdenka Kosarova1 , Katerina Slaba1 , Zdenek Kala1,3, Marek Svoboda1,2, Igor Kiss2 , Rostislav Vyzula2 , William C. Cho4 , and Ondrej Slaby1,2.
88 .Haiyan Chu PhD, Liping Xia PhD, Xiaonan Qiu MS, Dongying Gu PhD, Linjun Zhu PhD, Jing Jin MS, Gaoyun Hui MS, Qiuhan Hua MS, Mulong Du MS, Na Tong MD, Jinfei Chen PhD, Zhengdong Zhang PhD, Meilin Wang PhD
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Issue | Vol 13 No 3 (2021) | |
Section | Original Articles | |
DOI | https://doi.org/10.18502/bccr.v13i3.11404 | |
Keywords | ||
Colorectal Neoplasm (Colorectal Cancer) piR-SNPs rs 11776042 piR_01555 |
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Mobaraki M, Asadzadeh Aghdaei H, Angaji SA, Nazemalhosseini-Mojarad E, Arbabian S. The Evaluation Of rs11776042 Polymorphism Effect On Colorectal Cancer Risk In The Iranian Population: A Case-Control Study. Basic Clin Cancer Res. 2022;13(3):175-186.